Detailed information of SNP:
|
SNP ID:
sf0901582779(Gbrowse)
Chromosome: chr09 Position: 1582779 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 61.03% | 38.97% |
| All Indica | 788 | 93.65% | 6.35% |
| All Japonica | 492 | 4.88% | 95.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 93.75% | 6.25% |
| Indica II | 210 | 94.76% | 5.24% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 90 | 21.11% | 78.89% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 11 | 27.27% | 72.73% |
| Intermediate | 38 | 52.63% | 47.37% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901582779 | G->A | INTERGENIC | None |