Detailed information of SNP:
|
SNP ID:
sf0901586632(Gbrowse)
Chromosome: chr09 Position: 1586632 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 98.50% | 1.50% |
| All Indica | 784 | 97.58% | 2.42% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 368 | 97.83% | 2.17% |
| Indica II | 210 | 97.62% | 2.38% |
| Indica Intermediate | 206 | 97.09% | 2.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901586632 | G->A | LOC_Os09g03300(LOC_Os09g03300.1) | INTRON |