Detailed information of SNP:
|
SNP ID:
sf0901600797(Gbrowse)
Chromosome: chr09 Position: 1600797 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1386 | 56.13% | 43.87% |
| All Indica | 778 | 85.73% | 14.27% |
| All Japonica | 491 | 5.50% | 94.50% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 365 | 82.74% | 17.26% |
| Indica II | 206 | 93.20% | 6.80% |
| Indica Intermediate | 207 | 83.57% | 16.43% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 88 | 21.59% | 78.41% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 11 | 18.18% | 81.82% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901600797 | G->A | INTERGENIC | None |