Detailed information of SNP:
|
SNP ID:
sf0901628789(Gbrowse)
Chromosome: chr09 Position: 1628789 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 95.36% | 4.64% |
| All Indica | 794 | 99.62% | 0.38% |
| All Japonica | 471 | 88.32% | 11.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 98.79% | 1.21% |
| Tropical Japonica | 79 | 50.63% | 49.37% |
| Japonica Intermediate | 61 | 80.33% | 19.67% |
| Group VI/Aromatic | 7 | 71.43% | 28.57% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901628789 | G->T | INTERGENIC | None |