Detailed information of SNP:
|
SNP ID:
sf0901630141(Gbrowse)
Chromosome: chr09 Position: 1630141 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1328 | 83.13% | 16.87% |
| All Indica | 795 | 98.99% | 1.01% |
| All Japonica | 412 | 48.06% | 51.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 265 | 30.19% | 69.81% |
| Tropical Japonica | 87 | 95.40% | 4.60% |
| Japonica Intermediate | 60 | 58.33% | 41.67% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901630141 | A->G | LOC_Os09g03360(LOC_Os09g03360.1) | Synonymous |