Detailed information of SNP:
|
SNP ID:
sf0901690244(Gbrowse)
Chromosome: chr09 Position: 1690244 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 63.88% | 36.12% |
| All Indica | 798 | 94.99% | 5.01% |
| All Japonica | 489 | 9.61% | 90.39% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 87 | 39.08% | 60.92% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901690244 | G->A | LOC_Os09g03420(LOC_Os09g03420.1) | Non-Synonymous SNP |