Detailed information of SNP:
|
SNP ID:
sf0901693611(Gbrowse)
Chromosome: chr09 Position: 1693611 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 62.71% | 37.29% |
| All Indica | 796 | 94.60% | 5.40% |
| All Japonica | 497 | 8.25% | 91.75% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 373 | 92.76% | 7.24% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901693611 | C->T | INTERGENIC | None |