Detailed information of SNP:
|
SNP ID:
sf0901717260(Gbrowse)
Chromosome: chr09 Position: 1717260 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 60.34% | 39.66% |
| All Indica | 797 | 93.98% | 6.02% |
| All Japonica | 497 | 3.02% | 96.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901717260 | T->C | INTERGENIC | None |