Detailed information of SNP:
|
SNP ID:
sf0901738357(Gbrowse)
Chromosome: chr09 Position: 1738357 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 68.16% | 31.84% |
| All Indica | 790 | 93.92% | 6.08% |
| All Japonica | 497 | 21.53% | 78.47% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 92.99% | 7.01% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 208 | 93.27% | 6.73% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901738357 | T->C | LOC_Os09g03530(LOC_Os09g03530.1) | INTRON |