Detailed information of SNP:



SNP ID: sf0901761072(Gbrowse)

Chromosome: chr09

Position: 1761072
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1406 92.82% 7.18%
All Indica799 100.00% 0.00%
All Japonica484 79.34% 20.66%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica322 72.67% 27.33%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 83.82% 16.18%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0901761072 T->C INTERGENIC None