Detailed information of SNP:
|
SNP ID:
sf0901834907(Gbrowse)
Chromosome: chr09 Position: 1834907 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 92.13% | 7.87% |
| All Indica | 797 | 98.87% | 1.13% |
| All Japonica | 491 | 83.71% | 16.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 91 | 41.76% | 58.24% |
| Japonica Intermediate | 67 | 64.18% | 35.82% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901834907 | G->A | LOC_Os09g03650(LOC_Os09g03650.1) | INTRON |