Detailed information of SNP:
|
SNP ID:
sf0901839944(Gbrowse)
Chromosome: chr09 Position: 1839944 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 55.44% | 44.56% |
| All Indica | 798 | 87.84% | 12.16% |
| All Japonica | 496 | 0.20% | 99.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 91.98% | 8.02% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901839944 | G->A | LOC_Os09g03660(LOC_Os09g03660.1) | Synonymous |