Detailed information of SNP:
|
SNP ID:
sf0901840716(Gbrowse)
Chromosome: chr09 Position: 1840716 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 69.20% | 30.80% |
| All Indica | 799 | 64.33% | 35.67% |
| All Japonica | 497 | 78.07% | 21.93% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 62.67% | 37.33% |
| Indica II | 213 | 68.08% | 31.92% |
| Indica Intermediate | 211 | 63.51% | 36.49% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901840716 | C->T | LOC_Os09g03660(LOC_Os09g03660.1) | Non-Synonymous SNP |