Detailed information of SNP:
|
SNP ID:
sf0901939944(Gbrowse)
Chromosome: chr09 Position: 1939944 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1291 | 54.14% | 45.86% |
| All Indica | 679 | 75.26% | 24.74% |
| All Japonica | 492 | 19.11% | 80.89% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 303 | 83.83% | 16.17% |
| Indica II | 191 | 69.63% | 30.37% |
| Indica Intermediate | 185 | 67.03% | 32.97% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 92 | 71.74% | 28.26% |
| Japonica Intermediate | 66 | 31.82% | 68.18% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901939944 | T->C | LOC_Os09g03830(LOC_Os09g03830.1) | INTRON |