Detailed information of SNP:
|
SNP ID:
sf0901966595(Gbrowse)
Chromosome: chr09 Position: 1966595 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1370 | 69.20% | 30.80% |
| All Indica | 763 | 96.85% | 3.15% |
| All Japonica | 497 | 21.73% | 78.27% |
| Aus | 58 | 98.28% | 1.72% |
| Indica I | 352 | 96.88% | 3.12% |
| Indica II | 208 | 97.12% | 2.88% |
| Indica Intermediate | 203 | 96.55% | 3.45% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0901966595 | A->T | LOC_Os09g03870(LOC_Os09g03870.1) | INTRON |