Detailed information of SNP:



SNP ID: sf0901967940(Gbrowse)

Chromosome: chr09

Position: 1967940
Major allele: G

Minor allele: C

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of C(minor allele)
All1419 91.75% 8.25%
All Indica799 99.12% 0.88%
All Japonica497 81.49% 18.51%
Aus67 100.00% 0.00%
Indica I375 99.20% 0.80%
Indica II213 99.06% 0.94%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica335 97.61% 2.39%
Tropical Japonica94 38.30% 61.70%
Japonica Intermediate68 61.76% 38.24%
Group VI/Aromatic14 7.14% 92.86%
Intermediate42 88.10% 11.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0901967940 G->C LOC_Os09g03870(LOC_Os09g03870.1) INTRON