Detailed information of SNP:
|
SNP ID:
sf0902018555(Gbrowse)
Chromosome: chr09 Position: 2018555 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 96.95% | 3.05% |
| All Indica | 796 | 99.37% | 0.63% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 61 | 45.90% | 54.10% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0902018555 | C->T | LOC_Os09g03939(LOC_Os09g03939.1) | INTRON |
| sf0902018555 | C->T | LOC_Os09g03939(LOC_Os09g03939.2) | INTRON |