Detailed information of SNP:



SNP ID: sf0902027402(Gbrowse)

Chromosome: chr09

Position: 2027402
Major allele: A

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1407 79.10% 20.90%
All Indica798 98.62% 1.38%
All Japonica487 42.92% 57.08%
Aus67 100.00% 0.00%
Indica I375 98.67% 1.33%
Indica II213 99.06% 0.94%
Indica Intermediate210 98.10% 1.90%
Temperate Japonica326 25.46% 74.54%
Tropical Japonica93 97.85% 2.15%
Japonica Intermediate68 51.47% 48.53%
Group VI/Aromatic14 92.86% 7.14%
Intermediate41 90.24% 9.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0902027402 T->A INTERGENIC None