Detailed information of SNP:
|
SNP ID:
sf0902039540(Gbrowse)
Chromosome: chr09 Position: 2039540 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 95.68% | 4.32% |
| All Indica | 797 | 98.24% | 1.76% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 61 | 27.87% | 72.13% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0902039540 | C->T | INTERGENIC | None |