Detailed information of SNP:
|
SNP ID:
sf0902057823(Gbrowse)
Chromosome: chr09 Position: 2057823 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1310 | 63.66% | 36.34% |
| All Indica | 745 | 93.69% | 6.31% |
| All Japonica | 481 | 17.67% | 82.33% |
| Aus | 34 | 47.06% | 52.94% |
| Indica I | 365 | 95.89% | 4.11% |
| Indica II | 183 | 88.52% | 11.48% |
| Indica Intermediate | 197 | 94.42% | 5.58% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 85 | 67.06% | 32.94% |
| Japonica Intermediate | 62 | 32.26% | 67.74% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 36 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0902057823 | T->C | LOC_Os09g04010(LOC_Os09g04010.1) | Non-Synonymous SNP |