Detailed information of SNP:
|
SNP ID:
sf0902106236(Gbrowse)
Chromosome: chr09 Position: 2106236 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 90.35% | 9.65% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 496 | 79.23% | 20.77% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 24.73% | 75.27% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 9 | 22.22% | 77.78% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0902106236 | G->A | INTERGENIC | None |