Detailed information of SNP:
|
SNP ID:
sf0902153424(Gbrowse)
Chromosome: chr09 Position: 2153424 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1346 | 96.36% | 3.64% |
| All Indica | 729 | 93.83% | 6.17% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 334 | 93.71% | 6.29% |
| Indica II | 205 | 94.63% | 5.37% |
| Indica Intermediate | 190 | 93.16% | 6.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0902153424 | A->T | INTERGENIC | None |