Detailed information of SNP:
|
SNP ID:
sf0902199100(Gbrowse)
Chromosome: chr09 Position: 2199100 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1356 | 64.09% | 35.91% |
| All Indica | 741 | 90.15% | 9.85% |
| All Japonica | 496 | 21.77% | 78.23% |
| Aus | 64 | 85.94% | 14.06% |
| Indica I | 341 | 90.91% | 9.09% |
| Indica II | 200 | 90.50% | 9.50% |
| Indica Intermediate | 200 | 88.50% | 11.50% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 67 | 40.30% | 59.70% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0902199100 | A->G | INTERGENIC | None |