Detailed information of SNP:
|
SNP ID:
sf0902207073(Gbrowse)
Chromosome: chr09 Position: 2207073 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 92.52% | 7.48% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 482 | 79.67% | 20.33% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 322 | 72.98% | 27.02% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 84.85% | 15.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0902207073 | A->G | LOC_Os09g04200(LOC_Os09g04200.1) | Non-Synonymous SNP |