Detailed information of SNP:
|
SNP ID:
sf0902244657(Gbrowse)
Chromosome: chr09 Position: 2244657 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 60.95% | 39.05% |
| All Indica | 798 | 96.62% | 3.38% |
| All Japonica | 496 | 0.20% | 99.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0902244657 | T->C | INTERGENIC | None |