Detailed information of SNP:
|
SNP ID:
sf0902264202(Gbrowse)
Chromosome: chr09 Position: 2264202 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 59.86% | 40.14% |
| All Indica | 794 | 90.81% | 9.19% |
| All Japonica | 490 | 6.33% | 93.67% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 93.26% | 6.74% |
| Indica II | 212 | 85.38% | 14.62% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 89 | 24.72% | 75.28% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0902264202 | C->G | INTERGENIC | None |