Detailed information of SNP:
|
SNP ID:
sf0902264544(Gbrowse)
Chromosome: chr09 Position: 2264544 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 59.35% | 40.65% |
| All Indica | 786 | 91.09% | 8.91% |
| All Japonica | 489 | 5.32% | 94.68% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 367 | 94.82% | 5.18% |
| Indica II | 209 | 84.69% | 15.31% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 87 | 20.69% | 79.31% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0902264544 | C->A | INTERGENIC | None |