Detailed information of SNP:
|
SNP ID:
sf0902271767(Gbrowse)
Chromosome: chr09 Position: 2271767 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 62.91% | 37.09% |
| All Indica | 789 | 89.99% | 10.01% |
| All Japonica | 473 | 13.11% | 86.89% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 369 | 87.26% | 12.74% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 209 | 88.52% | 11.48% |
| Temperate Japonica | 332 | 0.60% | 99.40% |
| Tropical Japonica | 78 | 57.69% | 42.31% |
| Japonica Intermediate | 63 | 23.81% | 76.19% |
| Group VI/Aromatic | 9 | 55.56% | 44.44% |
| Intermediate | 37 | 70.27% | 29.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0902271767 | T->C | LOC_Os09g04270(LOC_Os09g04270.1) | INTRON |