Detailed information of SNP:
|
SNP ID:
sf0902277490(Gbrowse)
Chromosome: chr09 Position: 2277490 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1308 | 54.13% | 45.87% |
| All Indica | 712 | 74.30% | 25.70% |
| All Japonica | 497 | 22.13% | 77.87% |
| Aus | 44 | 68.18% | 31.82% |
| Indica I | 323 | 67.80% | 32.20% |
| Indica II | 196 | 89.29% | 10.71% |
| Indica Intermediate | 193 | 69.95% | 30.05% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0902277490 | T->G | LOC_Os09g04280(LOC_Os09g04280.1) | INTRON |