Detailed information of SNP:



SNP ID: sf0902342614(Gbrowse)

Chromosome: chr09

Position: 2342614
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 93.23% 6.77%
All Indica799 99.62% 0.38%
All Japonica497 81.69% 18.31%
Aus67 98.51% 1.49%
Indica I375 99.73% 0.27%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica335 75.52% 24.48%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 86.76% 13.24%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0902342614 A->G LOC_Os09g04420(LOC_Os09g04420.1) INTRON