Detailed information of SNP:
|
SNP ID:
sf0902469420(Gbrowse)
Chromosome: chr09 Position: 2469420 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 96.29% | 3.71% |
| All Indica | 796 | 98.24% | 1.76% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 52 | 30.77% | 69.23% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 94.76% | 5.24% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0902469420 | C->T | LOC_Os09g04624(LOC_Os09g04624.1) | INTRON |
| sf0902469420 | C->T | LOC_Os09g04624(LOC_Os09g04624.2) | INTRON |