Detailed information of SNP:
|
SNP ID:
sf0902523873(Gbrowse)
Chromosome: chr09 Position: 2523873 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 68.41% | 31.59% |
| All Indica | 798 | 95.36% | 4.64% |
| All Japonica | 497 | 21.13% | 78.87% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0902523873 | A->G | LOC_Os09g04740(LOC_Os09g04740.1) | Synonymous |