Detailed information of SNP:
|
SNP ID:
sf0902525765(Gbrowse)
Chromosome: chr09 Position: 2525765 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 96.09% | 3.91% |
| All Indica | 798 | 98.25% | 1.75% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 58 | 37.93% | 62.07% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0902525765 | G->A | LOC_Os09g04740(LOC_Os09g04740.1) | SNPs that introduce stop codons |