Detailed information of SNP:
|
SNP ID:
sf0902574416(Gbrowse)
Chromosome: chr09 Position: 2574416 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 95.08% | 4.92% |
| All Indica | 795 | 95.60% | 4.40% |
| All Japonica | 486 | 94.65% | 5.35% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 84 | 79.76% | 20.24% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0902574416 | G->C | LOC_Os09g04830(LOC_Os09g04830.1) | Non-Synonymous SNP |