Detailed information of SNP:
|
SNP ID:
sf0902580681(Gbrowse)
Chromosome: chr09 Position: 2580681 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 70.11% | 29.89% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 496 | 20.16% | 79.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 93 | 70.97% | 29.03% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0902580681 | A->C | LOC_Os09g04850(LOC_Os09g04850.1) | Synonymous |