Detailed information of SNP:
|
SNP ID:
sf0902626466(Gbrowse)
Chromosome: chr09 Position: 2626466 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 96.78% | 3.22% |
| All Indica | 795 | 99.87% | 0.13% |
| All Japonica | 453 | 90.95% | 9.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 99.70% | 0.30% |
| Tropical Japonica | 65 | 43.08% | 56.92% |
| Japonica Intermediate | 57 | 94.74% | 5.26% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0902626466 | G->A | INTERGENIC | None |