Detailed information of SNP:
|
SNP ID:
sf0902892640(Gbrowse)
Chromosome: chr09 Position: 2892640 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 99.22% | 0.78% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 490 | 98.37% | 1.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 332 | 98.80% | 1.20% |
| Tropical Japonica | 91 | 97.80% | 2.20% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0902892640 | T->C | LOC_Os09g06170(LOC_Os09g06170.1) | Synonymous |