Detailed information of SNP:
|
SNP ID:
sf0903032282(Gbrowse)
Chromosome: chr09 Position: 3032282 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 93.20% | 6.80% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 492 | 82.72% | 17.28% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 330 | 75.15% | 24.85% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0903032282 | G->A | INTERGENIC | None |