Detailed information of SNP:
|
SNP ID:
sf0903179038(Gbrowse)
Chromosome: chr09 Position: 3179038 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 85.16% | 14.84% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 496 | 78.02% | 21.98% |
| Aus | 65 | 26.15% | 73.85% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 93 | 20.43% | 79.57% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0903179038 | A->G | INTERGENIC | None |