Detailed information of SNP:



SNP ID: sf0903207447(Gbrowse)

Chromosome: chr09

Position: 3207447
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1417 61.33% 38.67%
All Indica798 97.24% 2.76%
All Japonica497 0.40% 99.60%
Aus67 100.00% 0.00%
Indica I375 97.07% 2.93%
Indica II213 98.12% 1.88%
Indica Intermediate210 96.67% 3.33%
Temperate Japonica335 0.30% 99.70%
Tropical Japonica94 0.00% 100.00%
Japonica Intermediate68 1.47% 98.53%
Group VI/Aromatic14 0.00% 100.00%
Intermediate41 58.54% 41.46%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0903207447 A->G LOC_Os09g06750(LOC_Os09g06750.1) Non-Synonymous SNP