Detailed information of SNP:
|
SNP ID:
sf0903222470(Gbrowse)
Chromosome: chr09 Position: 3222470 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1359 | 93.67% | 6.33% |
| All Indica | 788 | 97.84% | 2.16% |
| All Japonica | 454 | 87.89% | 12.11% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 98.66% | 1.34% |
| Indica II | 205 | 96.59% | 3.41% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 330 | 99.70% | 0.30% |
| Tropical Japonica | 71 | 35.21% | 64.79% |
| Japonica Intermediate | 53 | 84.91% | 15.09% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0903222470 | T->C | INTERGENIC | None |