Detailed information of SNP:



SNP ID: sf0903222470(Gbrowse)

Chromosome: chr09

Position: 3222470
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1359 93.67% 6.33%
All Indica788 97.84% 2.16%
All Japonica454 87.89% 12.11%
Aus67 98.51% 1.49%
Indica I372 98.66% 1.34%
Indica II205 96.59% 3.41%
Indica Intermediate211 97.63% 2.37%
Temperate Japonica330 99.70% 0.30%
Tropical Japonica71 35.21% 64.79%
Japonica Intermediate53 84.91% 15.09%
Group VI/Aromatic12 8.33% 91.67%
Intermediate38 94.74% 5.26%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0903222470 T->C INTERGENIC None