Detailed information of SNP:
|
SNP ID:
sf0903262501(Gbrowse)
Chromosome: chr09 Position: 3262501 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 59.73% | 40.27% |
| All Indica | 798 | 95.24% | 4.76% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 95.19% | 4.81% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0903262501 | A->G | LOC_Os09g06820(LOC_Os09g06820.1) | Non-Synonymous SNP |