Detailed information of SNP:
|
SNP ID:
sf0903263298(Gbrowse)
Chromosome: chr09 Position: 3263298 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 96.66% | 3.34% |
| All Indica | 796 | 98.74% | 1.26% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 58 | 39.66% | 60.34% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0903263298 | T->C | INTERGENIC | None |