Detailed information of SNP:
|
SNP ID:
sf0903294768(Gbrowse)
Chromosome: chr09 Position: 3294768 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1385 | 93.57% | 6.43% |
| All Indica | 765 | 88.89% | 11.11% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 92.20% | 7.80% |
| Indica II | 204 | 83.82% | 16.18% |
| Indica Intermediate | 202 | 88.12% | 11.88% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0903294768 | T->G | INTERGENIC | None |