Detailed information of SNP:
|
SNP ID:
sf0903355460(Gbrowse)
Chromosome: chr09 Position: 3355460 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 93.80% | 6.20% |
| All Indica | 796 | 99.62% | 0.38% |
| All Japonica | 476 | 84.66% | 15.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 78 | 37.18% | 62.82% |
| Japonica Intermediate | 64 | 70.31% | 29.69% |
| Group VI/Aromatic | 10 | 30.00% | 70.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0903355460 | T->A | LOC_Os09g06950(LOC_Os09g06950.1) | UTR_3_PRIME |