Detailed information of SNP:
|
SNP ID:
sf0903360943(Gbrowse)
Chromosome: chr09 Position: 3360943 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 98.02% | 1.98% |
| All Indica | 796 | 97.86% | 2.14% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0903360943 | C->A | INTERGENIC | None |