Detailed information of SNP:
|
SNP ID:
sf0903432897(Gbrowse)
Chromosome: chr09 Position: 3432897 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 92.15% | 7.85% |
| All Indica | 798 | 99.12% | 0.88% |
| All Japonica | 492 | 80.08% | 19.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 92 | 27.17% | 72.83% |
| Japonica Intermediate | 65 | 63.08% | 36.92% |
| Group VI/Aromatic | 3 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0903432897 | G->A | INTERGENIC | None |