Detailed information of SNP:
|
SNP ID:
sf0903434730(Gbrowse)
Chromosome: chr09 Position: 3434730 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 62.35% | 37.65% |
| All Indica | 798 | 97.74% | 2.26% |
| All Japonica | 496 | 1.81% | 98.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0903434730 | T->A | INTERGENIC | None |