Detailed information of SNP:
|
SNP ID:
sf0903522933(Gbrowse)
Chromosome: chr09 Position: 3522933 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 95.64% | 4.36% |
| All Indica | 797 | 99.50% | 0.50% |
| All Japonica | 479 | 88.94% | 11.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 82 | 43.90% | 56.10% |
| Japonica Intermediate | 62 | 91.94% | 8.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0903522933 | G->A | LOC_Os09g07190(LOC_Os09g07190.1) | Synonymous |