Detailed information of SNP:
|
SNP ID:
sf0903569719(Gbrowse)
Chromosome: chr09 Position: 3569719 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 86.81% | 13.19% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 481 | 62.99% | 37.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 48.14% | 51.86% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 83.33% | 16.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0903569719 | A->G | INTERGENIC | None |